DNA Damage Atlas

SRX5821821-NPC_UT_N2_3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9045287


Source Project ID:   

SRP197975

Cell Type:   

NPC9429


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002092


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72593732547299846.0994-
chr9_gl000199_random33849350793439033.0894+
chr9_gl000199_random56866574505719028.4605-
chr2136085146360853613608515526.76+
chrUn_gl000226071523924.2891-
chrUn_gl00022653777276705923.0033-
rDNA12331156771277722.6399+
chrUn_gl00022429154960441818.756-
chr9_gl000199_random43972445074424818.5208+
chr595456516954567169545651617.5798+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72593732547299845.6487-
chr9_gl000199_random33849350793439029.6881+
rDNA12331156621277729.0817+
chr9_gl000199_random56866574505719028.257-
chrUn_gl00022653777276705926.1844-
chr2136085147360853613608515523.4901+
chrUn_gl000226071523923.2018-
rDNA12962561173620.1322+
chr19_gl000208_random2171218517.953+
chrUn_gl00022429154960441817.0438-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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