DNA Damage Atlas

SRX5821822-NPC_UT_N2_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9045286


Source Project ID:   

SRP197975

Cell Type:   

NPC9429


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002732


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12129158151296340.0173+
rDNA444110300727.3912-
chr9_gl000199_random33768351723439021.4922+
chrUn_gl00022638457706569517.9593+
chr9_gl000199_random56662577405703715.8463+
chrUn_gl00022011773112038211809115.2403+
chr9_gl000199_random72091742537299814.5808-
chr19_gl000208_random09535114.0922+
chrUn_gl00022811625111962611875113.6359-
chrUn_gl0002260134020213.2093-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72593732547299845.6487-
chr9_gl000199_random33849350793439029.6881+
rDNA12331156621296329.0817+
chr9_gl000199_random56866574505703728.257+
chrUn_gl00022653777276569526.1844+
chr2136085147360853613608515523.4901+
chrUn_gl000226071520223.2018-
chr19_gl000208_random217125117.953+
chrUn_gl00022429154960441817.0438-
chr9_gl000199_random11020711065811044716.3893+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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