DNA Damage Atlas

SRX5821823-NPC_UT_N2_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9045284


Source Project ID:   

SRP197975

Cell Type:   

NPC9429


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00275


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12178156621427525.5755+
chr9_gl000199_random33745351723442724.7444+
chrUn_gl00022638897622702216.6198-
chr9_gl000199_random72262742937299816.4288-
chr9_gl000199_random56455577405703714.348+
chrUn_gl0002260134820213.9939-
chr19_gl000208_random09685113.1221+
rDNA82561186412.9955-
chrUn_gl00022428425476441812.7218-
chrUn_gl00022811611111965811875112.6675-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72593732547299845.6487-
chr9_gl000199_random33849350793442729.6881+
rDNA12331156621427529.0817+
chr9_gl000199_random56866574505703728.257+
chrUn_gl00022653777276702226.1844-
chr2136085147360853613608515523.4901+
chrUn_gl000226071520223.2018-
rDNA12962561186420.1322-
chr19_gl000208_random217125117.953+
chrUn_gl00022429154960441817.0438-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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