DNA Damage Atlas

SRX5821824-NPC_UT_N1T1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9045283


Source Project ID:   

SRP197975

Cell Type:   

NPC9429


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003611


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12234157951341633.7861+
chr9_gl000199_random72262734207299825.0583-
chr9_gl000199_random33758351723442723.9592+
rDNA623236186421.0318-
chrUn_gl0002260124620215.7464-
chr19_gl000208_random086618515.4441+
chrUn_gl00022811612611963311875114.5827-
chr9_gl000199_random56676577415719014.5223-
chrUn_gl00022638497605705914.0552-
chrUn_gl00022429265502441813.3116-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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