DNA Damage Atlas

SRX5821825-HeLa_UT_N1T2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9045282


Source Project ID:   

SRP197975

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000371


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12319156531439339.3715+
chr595456516954567289545651623.0706+
chr9_gl000199_random72262741887299822.3321-
chr9_gl000199_random33768351353439021.9934+
chrUn_gl00022640167581569520.3773+
chrUn_gl00022811588611963711875118.063-
chrUn_gl0002260122320217.1728-
chrUn_gl00022011756312044611889316.8401-
rDNA27880294372855715.9835+
chr19_gl000208_random08375115.8976+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12319154411439343.596+
chr9_gl000199_random72262735877299831.754-
chr595456516954567169545651627.0186+
chr9_gl000199_random33768351353439023.1772+
chr1549730111497303114973031122.8387-
chr9_gl000199_random13782913828113813720.8576-
chr513010075130102751301027520.6754-
chrUn_gl00022640267581569520.6334+
chr9_gl000199_random56658576795719019.9554-
chr1110041197410041217410041197419.7542+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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