DNA Damage Atlas

SRX5821826-HeLa_UT_N1T1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9045285


Source Project ID:   

SRP197975

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00061


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12129154411439342.6886+
chr9_gl000199_random72262735877299832.0778-
chr595456487954567169545651626.788+
chr1549730111497303114973031124.0997-
chrUn_gl00022013158013200813180823.8881+
chr9_gl000199_random13782913828113813722.6197-
chr9_gl000199_random56658576795719021.172-
chrUn_gl00022640267628569520.7612+
chr9_gl000199_random33768353823439020.7233+
chr1110041197410041217410041197420.4482+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12319154411439343.596+
chr9_gl000199_random72262735877299831.754-
chr595456516954567169545651627.0186+
chr9_gl000199_random33768351353439023.1772+
chr1549730111497303114973031122.8387-
chr9_gl000199_random13782913828113813720.8576-
chr513010075130102751301027520.6754-
chrUn_gl00022640267581569520.6334+
chr9_gl000199_random56658576795719019.9554-
chr1110041197410041217410041197419.7542+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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