DNA Damage Atlas

SRX5821827-GM13069_UT_N2T1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9045281


Source Project ID:   

SRP197975

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq X Ten


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000874


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021680336813548073159.3426-
chrUn_gl00021614474814559314544654.4066-
rDNA913152186453.2862-
rDNA12312173501277753.167+
rDNA62777355647350.9106+
chr9_gl000199_random33922349993439050.4825+
chr9_gl000199_random72262736827299850.2582-
chrUn_gl00022811617111975411863935.864+
chrUn_gl00022012882913068012964632.4156-
chrUn_gl00022638227640705931.4039-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12312158061277759.251+
chr9_gl000199_random72399734307299850.2207-
rDNA913152186447.2191-
chr9_gl000199_random33922349993439039.8769+
chrUn_gl00021680336813548073134.6129-
chrUn_gl00021614474814559314544633.0376-
chr9_gl000199_random98804993649899426.547-
chrUn_gl00022811617111975411863925.86+
chrUn_gl00022513141813209813167125.7703+
chrUn_gl00022012294412427712371625.3207-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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