DNA Damage Atlas

SRX5821828-GM13069_UT_N1T1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9045280


Source Project ID:   

SRP197975

Cell Type:   

GM13069


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.006479


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12238158061385055.6073-
rDNA423272153039.2688+
chr9_gl000199_random72399734307298233.5048-
chr9_gl000199_random33850352013440824.9234+
chr9_gl000199_random56578577315703021.3499+
chrUn_gl00022513141013209813173819.9859+
rDNA35303389803685518.1687-
chrUn_gl00022011772312043711881118.1156+
chrUn_gl00022638567605705917.2294-
chrUn_gl00022811615511986111727815.3298-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12312158061385059.251-
chr9_gl000199_random72399734307298250.2207-
rDNA913152153047.2191+
chr9_gl000199_random33922349993440839.8769+
chrUn_gl00021680336813548062434.6129+
chrUn_gl00021614474814559314520133.0376+
chr9_gl000199_random98804993649899426.547-
chrUn_gl00022811617111975411727825.86-
chrUn_gl00022513141813209813173825.7703+
chrUn_gl00022012294412427712360625.3207+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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