DNA Damage Atlas

SRX6479614-HeLa_RPB1-K1268R_7J_12h_3E10_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9722145


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

12hrs


Treatment Dose:   

7J/m2


Genotype:   

RPB1-K1268R


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr566822667524467181733.5254/
chr2242901810429094334290642932.0124/
chr7_gl000195_random16778316837916811431.4254/
chr2224311139243145692431316623.5958/
chr7_gl000195_random14127214336514294423.1881/
chr1958915879589219765891950921.6604/
chr1621512523215172972151339920.2462/
chr1773768639737761307377261519.9657/
chr546840947447047247419.7816/
chr1622307851223106902230989118.8286/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2242902741429082444290642924.1046
chr1621512643215141392151339921.2789
chr1958917544589219765891950919.3792
chr2224311208243144692431316619.3569
chr1622307958223106902230989116.6805
chr7_gl000195_random16780116830116811413.8077
chr7_gl000195_random14130714324814294413.3605
chr1947243964725127472471211.7073
chr6_qbl_hap631633803163682316353111.4838
chr317058064117058833517058359111.3433
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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