DNA Damage Atlas

SRX6479616-HeLa_RPB1-K1268R_7J_12h_3E10_3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9722143


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

12hrs


Treatment Dose:   

7J/m2


Genotype:   

RPB1-K1268R


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2224311203243145052431305717.7228/
chr2242902741429093594290701616.7205/
chr1249666548496722964966775815.776/
chr1958917208589220215891946315.3599/
chr1249657740496662044966037613.7935/
chr1620089032017514201147913.4764/
chr1621512607215141392151348412.9241/
chr223257796623258213523257884412.1121/
chr114981490814982204114981523011.7766/
chr627792081277939842779256611.2049/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2242902741429082444290701624.1046
chr1621512643215141392151348421.2789
chr1958917544589219765891946319.3792
chr2224311208243144692431305719.3569
chr1622307958223106902230993316.6805
chr7_gl000195_random16780116830116795413.8077
chr7_gl000195_random14130714324814289813.3605
chr1947243964725127472471811.7073
chr6_qbl_hap631633803163682316353411.4838
chr317058064117058833517058338611.3433
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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