Sample Detail

DNA Damage Atlas

SRX6479617-HeLa_WT_0J_0h_3E10_1

Basic Information

Manual

Sample ID:

SRR9722142

Source Project ID:

Cell Type:

HeLa

Organism:

Homo sapiens

Treatment:

NT

Genotype:

WT

Layout:

PAIRED

Instrument model:

Illumina HiSeq 2500

Technique:

TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Chromosome	Start	End	Summit	Intensity	Strand
chr12	49518772	49522269	49520984	40.8549	/
chr10	74031389	74039061	74036426	35.8806	/
chr19	49990357	49998423	49996431	34.5834	/
chr16	2198200	2205542	2200947	34.4308	/
chr17	62222869	62229594	62224551	33.5593	/
chr19	18496296	18502886	18500990	33.4444	/
chr9	140135334	140140455	140138535	33.2025	/
chr2	20646313	20653670	20649970	32.8551	/
chr17	39844609	39852703	39848593	31.0669	/
chr2	232577971	232581523	232578855	31.0246	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr22	50923528	50925062	50924451	84.464	/
chr19	18498652	18501974	18500990	57.3317	/
chr12	49518772	49522269	49520984	40.8549	/
chr10	74032033	74038875	74036426	40.0218	/
chr16	87798449	87800462	87799393	35.5559	/
chr16	2198200	2205542	2200947	34.4308	/
chr2	20646378	20653512	20649970	33.8666	/
chr17	62222899	62229594	62224551	33.7097	/
chr9	140135334	140140455	140138535	33.2025	/
chr16	3070291	3075028	3073784	31.5938	/

Download the Full Merged Peak List

Visualization

Manual

Download the matrix file

Motif Analysis

Manual

Download

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