DNA Damage Atlas


SRX6479618-HeLa_UVSSA_7J_12h_A304-405A_1




Basic Information

Manual

Sample ID:   

SRR9722141


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

12hrs


Treatment Dose:   

7J/m2


Genotype:   

ΔUVSSA


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0416320848.1109/
chrUn_gl00022513161913197013174013.9553/
chrUn_gl0002265929417513.6064/
chrUn_gl00021615427215450315438613.253/
rDNA51877964712.7723/
chr627869024278713392787034412.7541/
chr674220934742273607422424311.5927/
chr1249522511495274984952509611.5137/
rDNA12972132241309711.0687/
chr674227538742324707423069411.0214/
Download the Full Peak List



Motif Analysis

Manual





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