DNA Damage Atlas

SRX6479640-HeLa_UVSSA_7J_12h_3E10_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9722119


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

12hrs


Treatment Dose:   

7J/m2


Genotype:   

ΔUVSSA


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1249517593495222384952079314.808/
chr2242902703429081684290710514.4149/
chr2224311233243144872431349014.2366/
chr1958917635589219935891938014.0161/
chr1249666562496723834966784313.8464/
chr1621512636215141352151349512.8246/
chr546847947458647264712.2738/
chr114981493314982202514981532311.539/
chr627792072277939712779271910.8972/
chrUn_gl00021444105474664534710.7223/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1781290788131069813045518.6909/
chr1622308018223107612230993915.3885/
chr1622206742222072572220711415.1825/
chr2242902897429081684290710514.9232/
chr1249517593495222214952079314.8624/
chr2224311280243144722431349014.5131/
chr1249666580496722424966784314.2353/
chr1773029624730317757303120314.1575/
chr1958917643589219935891938014.0418/
chr1621512709215141172151349513.6535/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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