DNA Damage Atlas

SRX6479657-HeLa_CSB_7J_3h_3E10_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9722102


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

3hrs


Treatment Dose:   

7J/m2


Genotype:   

ΔCSB


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1159317781593190395931817714.5946/
chr1622307856223129612230993612.0014/
chr1780286988029652802907711.1383/
chr1781288018131388813047610.8145/
chr1249657963496661934966046910.6231/
chr1949375314493802674937776610.591/
chr627763291277641502776370910.4911/
chr510756427107630811076074910.3901/
chr2224311266243144882431397610.1234/
chr7_gl000195_random1412721432681417939.90595/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1159317781593189225931817715.1972
chr1022517964225190372251850513.6185
chr627763328277639262776370913.1513
chr1780287508029539802907712.1941
chr1622308187223129612230993612.0481
chr1781290888131044813047611.6971
chr510756457107624431076074911.5028
chr7_gl000195_random14135414323714179311.3558
chr1249657963496661694966046910.6258
chr2224311266243144542431397610.3936
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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