DNA Damage Atlas

SRX6479664-HeLa_CSB_7J_6h_3E10_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9722095


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

6hrs


Treatment Dose:   

7J/m2


Genotype:   

ΔCSB


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1249522484495281134952459911.5035/
chr2224311232243144882431348911.2088/
chr1249657923496661934966031210.3402/
chr114981492114982202314981616410.208/
chr72516331125165611251647979.33079/
chr7_gl000195_random1412801432761428838.83267/
chr51075643710764682107610138.29827/
chr161200256112011191120090228.02353/
chr7_gl000195_random1376861387551384987.8607/
chr54685054745844723217.83311/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2224311303243144582431348911.5676/
chr1249657961496633674966031211.0789/
chr1159317665593188625931816510.8399/
chr510756460107625771076101310.5521/
chr114981495514982198914981616410.3067/
chr1716284089162854591628473910.2829/
chr178129159813082981304639.71826/
chr162230808622312848223099359.67942/
chr157915249679153197791529129.57807/
chr162151290921514100215135069.40732/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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