DNA Damage Atlas

SRX6479667-HeLa_UVSSA_0J_0h_3E10_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9722092


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

ΔUVSSA


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-total RPB1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1249518278495222264952083128.0645/
chr1249666586496713554966855727.4621/
chr1050229635029385502771125.5433/
chr223257801723258184923257905323.9028/
chr1762222788622309376222631523.5649/
chr1939691863973170397152222.9143/
chr1917970634179791131797687222.3782/
chr914013560714014103114013866322.3194/
chr1739844996398532743984861921.5469/
chr581568718815747438157002221.5096/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1050248015029202502771134.4565/
chr1939701443973158397152229.5978/
chr1249666589496711284966855728.7753/
chr1762222788622293446222631528.5392/
chr1249518278495222264952083128.0645/
chr223257801723258184923257905323.9028/
chr914013560714014079614013866323.2421/
chr1917970655179789761797687222.7787/
chr581568718815745198157002222.2788/
chr1739844996398532253984861921.669/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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