DNA Damage Atlas

SRX6479672-HeLa_UVSSA_7J_3h_3E10_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9722087


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

3hrs


Treatment Dose:   

7J/m2


Genotype:   

ΔUVSSA


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr914013550614014077414013852818.2117/
chr1249666552496713034966789315.5992/
chr223257796323258253523257882812.9805/
chr2224311204243145062431310612.7452/
chr1620092902017126201127912.3344/
chr1947244214725089472471511.6392/
chr1958917614589219145891960810.9981/
chr7_gl000195_random14129014328614180110.8639/
chr546848447458747248610.7527/
chr627792056277939882779235910.7069/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1249666557496713034966789315.3026
chr223257799423258183423257882813.2848
chr2224311242243144682431310612.9801
chr1781291858130935813044012.1791
chr627792088277939252779235911.5427
chr7_gl000195_random14132414324414180111.4264
chr1621512731215140902151349510.8699
chr510756456107622221076077610.7191
chr1924759672481534247866810.584
chr613226664113227262713226966510.5381
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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