Sample Detail

DNA Damage Atlas

SRX6479677-HeLa_CSA_0J_0h_3E10_1

Basic Information

Manual

Sample ID:

SRR9722082

Source Project ID:

Cell Type:

HeLa

Organism:

Homo sapiens

Treatment:

NT

Genotype:

ΔCSA

Layout:

SINGLE

Instrument model:

Illumina HiSeq 2500

Technique:

TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Chromosome	Start	End	Summit	Intensity	Strand
chr6	74221054	74227346	74224287	57.1172	/
chr12	54678868	54685556	54682530	39.8909	/
chr16	2197481	2205666	2200939	39.396	/
chrX	153575500	153576332	153575807	39.0104	/
chr2	232578027	232581596	232579024	36.4805	/
chr12	49518566	49521861	49520861	35.8603	/
chr17	62222813	62229750	62225697	33.8786	/
chr12	49666605	49671226	49667814	32.7953	/
chr11	61727864	61735346	61730528	31.4855	/
chr19	3970333	3973139	3972962	29.9677	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr2	232578027	232581596	232579024	36.4805	/
chr12	49518566	49521861	49520861	35.8603	/
chr17	62222813	62229750	62225697	33.8786	/
chr12	49666624	49671226	49667814	32.9307	/
chr19	3970333	3973139	3972962	29.9677	/
chr1	192777992	192784970	192781978	27.4275	/
chr5	81568695	81574297	81570323	26.7975	/
chr7	44841106	44846358	44843844	26.0193	/
chr6	133135580	133143192	133140814	25.8034	/
chr22	42963250	42967086	42965594	25.6906	/

Download the Full Merged Peak List

Visualization

Manual

Download the matrix file

Motif Analysis

Manual

Download

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