DNA Damage Atlas

SRX6479678-HeLa_WT_7J_12h_3E10_4

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9722081


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

12hrs


Treatment Dose:   

7J/m2


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr223257791223258183923257885924.036/
chr1249517919495258404952086720.7637/
chr1917970570179794341797640820.3557/
chr2242902642429094134290701418.8903/
chr2224311155243145612431336717.1527/
chr1762222449622298566222461716.7675/
chr317058055617058847017058354116.5052/
chr867829345678381246783310216.3426/
chr581567044815752748157126015.0827/
chr546846947458647253214.5319/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1249519060495222114952086734.1196
chr2242902829429082154290701425.3088
chr581568751815742258157126022.4779
chr1762223025622292946222461721.1957
chr317058157917058816517058354119.3764
chr2224311253243144722431336718.6035
chr642857400428596024285832816.4394
chr546851347438947253216.086
chr220646614206521152064932716.078
chrX15362524115363162115362981515.015
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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