DNA Damage Atlas

SRX6479693-HeLa_CSA_7J_12h_3E10_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9722066


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

12hrs


Treatment Dose:   

7J/m2


Genotype:   

ΔCSA


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1249517332495223194952103715.3149/
chr2242902804429094264290694315.1812/
chr1249666485496720674966770814.9512/
chr2224311141243145692431326214.5397/
chr1958915997589220735891941313.0223/
chr11498148441498221011498152479.78147/
chr58156614881574737815712619.76606/
chr7_gl000195_random1413981433481428919.43256/
chr162739487274428627430298.75591/
chr173735606637364465373615797.38168/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1249518522495218634952103721.6419/
chr2242902949429081704290694318.4248/
chr1958917651589219375891941317.7951/
chr1249666602496713314966770817.3351/
chr2224311260243144492431326215.6294/
chr1621512721215141332151349514.6362/
chr1629606278296071632960658714.1544/
chr581568732815744288157126113.4179/
chr194312649943137189431309911.3225/
chr1458706298587070985870668710.9013/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab