DNA Damage Atlas

SRX6479694-HeLa_CSB_0J_0h_3E10_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9722065


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

ΔCSB


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-total RPB1)


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1762222757622292296222568833.3229/
chr1621975442206359220291732.4683/
chr1249518363495222284952082030.9509/
chr1249666464496714824966781227.6078/
chr223257787823258182223257903927.139/
chr613313512513314311713314046324.0009/
chr1917970475179790341797682123.9749/
chr1774561194745653507456254422.9171/
chr411919946211920653211920353322.7655/
chr220646389206527382064979622.707/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1762222757622292296222568833.3229/
chr1249518363495222154952082031.0554/
chr1249666543496714824966781228.0494/
chr223257787823258182223257903927.139/
chr613313562613314311713314046325.4855/
chr581568738815743698157033324.0647/
chr627832763278356532783438923.5454/
chr220646620206527382064979623.5383/
chr411919959811920653211920353323.1891/
chr1774561208745653507456254422.9946/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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