Sample Detail

DNA Damage Atlas

SRX6479701-HeLa_RPB1-K1268R_0J_0h_3E10_1

Basic Information

Manual

Sample ID:

SRR9722058

Source Project ID:

Cell Type:

HeLa

Organism:

Homo sapiens

Treatment:

NT

Genotype:

RPB1-K1268R

Layout:

PAIRED

Instrument model:

Illumina HiSeq 2500

Technique:

TCR-seq (anti-RPB1-phospho-Ser2-CTD, clone 3E10)

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Chromosome	Start	End	Summit	Intensity	Strand
chr16	3070337	3074958	3073813	34.6354	/
chr17	39844643	39853262	39848633	31.7569	/
chr16	2197790	2205961	2202971	31.7312	/
chr12	49518590	49525770	49520871	31.4743	/
chr9	140135560	140141057	140138602	30.7947	/
chr2	20645869	20654010	20649976	30.5684	/
chr2	232577953	232581759	232578993	30.1508	/
chr19	18496368	18503207	18501169	29.8735	/
chr17	62222858	62229581	62226160	29.2377	/
chr5	668111	675253	672742	28.9118	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr22	50923315	50925722	50924448	48.5408	/
chr19	18498441	18502506	18501169	47.2327	/
chr16	3070337	3074958	3073813	34.6354	/
chr2	20646286	20653653	20649976	33.5981	/
chr16	2197790	2205961	2202971	31.7312	/
chr12	49518590	49525770	49520871	31.4743	/
chr17	62222858	62229581	62226160	29.2377	/
chr10	74032256	74038878	74036468	28.8595	/
chr19	17970572	17978366	17976594	28.301	/
chr1	68153005	68157023	68154509	27.0165	/

Download the Full Merged Peak List

Visualization

Manual

Download the matrix file

Motif Analysis

Manual

Download

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