DNA Damage Atlas

SRX7044120-HeLa_DSBC_10CPT_N1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10333984


Source Project ID:   

SRP226699

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

Camptothecin


Treatment Time:   

24hrs


Treatment Dose:   

10uM


Layout:   

PAIRED


Instrument model:   

illumina HiSeq X Ten


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000511


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34048350693439055.9587+
chr9_gl000199_random72206744187299854.2696-
chrUn_gl00022811615711963611863938.2932+
rDNA12141173001681138.0525-
chrUn_gl00022639257743705937.1626-
chrUn_gl00021611682498155237.0536-
chrUn_gl00021614471714586214549432.3198-
chr9_gl000199_random44095452684492831.7791+
chr19_gl000208_random094349629.7672-
chrUn_gl00021680169823428073129.5325-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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