DNA Damage Atlas

SRX7044121-HeLa_DSBC_UT_N2T1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10333983


Source Project ID:   

SRP226699

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000409


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72262734007299837.4282-
rDNA12232157201277725.6646+
chr9_gl000199_random33713352243439023.4641+
chr19_gl000208_random07305119.6687+
rDNA27910291452855719.0953+
chrUn_gl0002261122320218.1825-
chrUn_gl00022638647710569517.9573+
chrUn_gl00022811625211963711875116.8009-
chr9_gl000199_random56660579465719016.4668-
chr1549730000497303264973031116.2395-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72262734007299833.9413-
rDNA12232157201277724.0802+
chr9_gl000199_random33745352243439021.8603+
chr19_gl000208_random07305120.9585+
rDNA27910291452855719.1311+
chr9_gl000199_random56660577405719018.8589-
chrUn_gl0002261122320217.7756-
chrUn_gl00022638647710569517.236+
chrUn_gl00022811625211963711875116.5343-
chr335738369357385693573836915.1259+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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