DNA Damage Atlas

SRX7044123-HeLa_DSBC_UT_N3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10333980


Source Project ID:   

SRP226699

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

illumina HiSeq X Ten


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000209


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72105733957299888.1411-
chr9_gl000199_random34076350693439068.0881+
chr9_gl000199_random82759834218290242.9388+
chrUn_gl00022639917578634234.7732-
chrUn_gl00022811606011966911863932.3251+
chrUn_gl00021680196818308073132.1584-
rDNA12319157511451131.301-
chrUn_gl00022513336713414313346827.9642+
chr19_gl000208_random095249626.2794-
chrUn_gl00021675581765547602626.0809-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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