DNA Damage Atlas

SRX7044124-HeLa_DSBC_1_5ETO_N1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10333979


Source Project ID:   

SRP226699

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

1.5uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000179


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr19_gl000208_random07275127.4711+
chr9_gl000199_random33760352383439023.063+
chrUn_gl0002260135820221.7875-
rDNA12129157821372718.6457+
chr9_gl000199_random71562739587299818.4201-
chrUn_gl00022625397628634218.193-
chr9_gl000199_random56434577175719017.6322-
rDNA27741290562855714.7187+
chr411600383116006591160058314.0701-
chr9_gl000199_random43835451874424813.9968+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr19_gl000208_random07275127.8689+
chr9_gl000199_random33760350993439025.2082+
rDNA12129156971372723.5958+
chrUn_gl00022639257628634222.0988-
chrUn_gl0002260134120221.7105-
chr9_gl000199_random71908739587299821.2709-
chr511556928511556948511556948518.9066-
chr411600383116005831160058318.2644-
chr9_gl000199_random56455577175719017.9916-
rDNA27793290562855715.8201+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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