DNA Damage Atlas

SRX7044125-HeLa_DSBC_1_5ETO_N2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10333982


Source Project ID:   

SRP226699

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

1.5uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000149


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12125156971378828.104-
chr19_gl000208_random096818521.9003+
chrUn_gl0002260134120221.3572-
chrUn_gl00022639257710569520.7811+
chr9_gl000199_random33450350993439020.3761+
chr9_gl000199_random56455577405719017.8303-
chr9_gl000199_random71908744497299817.5458-
chr411600383116005831160058317.4202-
rDNA27793291772855715.2322+
chr623193678231938812319367814.8356+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr19_gl000208_random072718527.8689+
chr9_gl000199_random33760350993439025.2082+
rDNA12129156971378823.5958-
chrUn_gl00022639257628569522.0988+
chrUn_gl0002260134120221.7105-
chr9_gl000199_random71908739587299821.2709-
chr511556928511556948511556948518.9066-
chr411600383116005831160058318.2644-
chr9_gl000199_random56455577175719017.9916-
rDNA27793290562855715.8201+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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