DNA Damage Atlas

SRX7044126-HeLa_DSBC_15ETO_N1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10333978


Source Project ID:   

SRP226699

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

15uM


Layout:   

PAIRED


Instrument model:   

illumina NextSeq 500


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000298


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA12274156851428756.202+
chr19_gl000208_random08745121.8126+
chr9_gl000199_random71877736117299821.3375-
chr9_gl000199_random33768351843442720.031+
chrUn_gl00022638077706569519.6092+
chrUn_gl00022011763312042411886418.445+
chrUn_gl0002260134620217.8156-
chr1224945252249454892494545215.4153-
rDNA76598371815415.0205-
rDNA27665290612855714.8935+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA12274156851428767.6531+
chr9_gl000199_random72262736097299827.4425-
chrUn_gl00022011764212042411886424.7636+
rDNA58313162123.8779+
chr9_gl000199_random33768351283442721.2736+
chr19_gl000208_random08745120.9391+
chrUn_gl00022639127628569519.6499+
chrUn_gl0002260134620218.3074-
chr658527097585272975852729718.0303-
rDNA27892290612855717.2494+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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