DNA Damage Atlas

SRX7044128-HeLa_DSBC_1CPT_N1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10333976


Source Project ID:   

SRP226699

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

Camptothecin


Treatment Time:   

24hrs


Treatment Dose:   

1uM


Layout:   

PAIRED


Instrument model:   

illumina HiSeq X Ten


Technique:   

DSBCapture


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000279


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random71947734947299872.6344-
rDNA12177157951451253.0468-
chrUn_gl00021680166815358073144.1709-
chr9_gl000199_random33768351143439042.3775+
chr19_gl000208_random083218538.1773+
chrUn_gl00022811584911990611863936.0773+
rDNA35024243356833.6084+
chrUn_gl00022639967767634230.9243-
rDNA145325851830.5387+
chrUn_gl00021614467414641714549429.3458-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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