DNA Damage Atlas

SRX7294480-U2OS_Thy_R08h

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10615347


Source Project ID:   

PRJNA588267

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Thymidine + release


Treatment Time:   

18hrs + 8hrs


Treatment Dose:   

2mM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

MiDAS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819937.5356/
rDNA2820028599283993.12746/
rDNA4160042199418992.51057/
chr163281720032817799328174992.2969/
chr81378780001379295991379037992.11825/
chr81377612001378695991378153992.091/
chr81378706001378771991378738992.03159/
chr81379308001380037991379672991.97942/
chr81388310001390547991389428991.89706/
chr43026020030279599302698991.84236/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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