DNA Damage Atlas

SRX7294490-U2OS_altMIDAS_aph0_4

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10615337


Source Project ID:   

PRJNA588267

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Dose:   

0.4uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

MiDAS


Others:   

MIDAS alternate protocol


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199406.29/
chr213804180013804199913804189912.8374/
chr1057446400574465995744649911.5536/
chr1057712000577121995771209911.5536/
chr1224160800243885992427469910.721/
chr1046113400461135994611349910.2699/
chr539786000397861993978609910.2699/
chr612105420012105439912105429910.2699/
chr813185360013185379913185369910.2699/
rDNA18400185991849910.2699/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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