DNA Damage Atlas


SRX7294493-U2OS_Thy_R16hAphRO3306




Basic Information

Manual

Sample ID:   

SRR10615334


Source Project ID:   

PRJNA588267

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Thymidine + (Aphidicolin + RO3306) release


Treatment Time:   

18hrs + 16hrs


Treatment Dose:   

2mM Thymidine + 0.4uM Aphidicolin + 9uM RO3306


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

MiDAS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819940.1976/
rDNA2820028599283993.62858/
chr41679446001679451991679448993.43756/
rDNA4160042199418992.52446/
rDNA3120032399317992.17352/
chr81377612001378687991378149991.87391/
chr81379308001380471991379889991.77812/
chr88916720089169999891685991.75867/
chr86013540060136799601360991.72481/
chr81376248001377603991376925991.72352/
Download the Full Peak List



Motif Analysis

Manual





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