DNA Damage Atlas

SRX7294499-U2OS_EdUseq_RIF1siRNA_b

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10615328


Source Project ID:   

PRJNA588267

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea


Treatment Time:   

14hrs


Treatment Dose:   

2mM


Genotype:   

RIF1 siRNA


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM05825311138.0137/
rDNA32289324793238311.282/
chrUn_gl00022014282114322014295011.1153/
rDNA2813628680285489.55662/
rDNA4189842244421319.18617/
chr9_gl000199_random4419644384442898.25665/
rDNA3169632173319298.16131/
rDNA3121631409313118.04274/
chrUn_gl0002201450901452691451787.8459/
rDNA4155441768416607.82918/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819941.2892/
rDNA4160042199418998.10327/
rDNA3120032599318995.42443/
rDNA3380034199339993.58159/
chr221971220019712799197126993.53747/
rDNA2720028799279993.48242/
chr81420120001421379991420749993.3869/
chr221971520019747999197315993.02361/
chr81423190001424015991424008992.9752/
chr221970680019709199197090992.86546/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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