DNA Damage Atlas

SRX7294504-HELA_mainMIDAS_aph0_4_rep1_a

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10615323


Source Project ID:   

PRJNA588267

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Dose:   

0.4uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

MiDAS


Others:   

MIDAS main protocol


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819948.6701/
rDNA4160042399419995.51328/
rDNA3120032599318995.13291/
rDNA3380034199339994.764/
chr22056354002058557992057455993.77549/
rDNA2840029399288993.53366/
chr22060740002062445992061592993.31629/
rDNA1260014999137993.18196/
chrX6856600725319970548993.14411/
chr81282274001282415991282344993.13429/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819949.9648
rDNA3120032599318997.20706
rDNA4160042399419996.10333
rDNA1340014999137994.07703
chr81282304001282415991282344993.45138
rDNA4020040799404993.05781
rDNA3760038599384993.02182
rDNA3380034199339992.78824
rDNA1840020199192992.70001
chr22061354002061609992061592992.66854
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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