DNA Damage Atlas

SRX7294508-HS68_mainMIDAS_aph0_4_b

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10615319


Source Project ID:   

PRJNA588267

Cell Type:   

HS68


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Dose:   

0.4uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

MiDAS


Others:   

MIDAS main protocol


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199143.882/
rDNA41600423994199911.0507/
chr214811980048119999481198998.95532/
rDNA3120032599318998.10629/
rDNA2720029399282993.57321/
chr224205300042053399420531993.45134/
chr56071180060712199607119993.45134/
chr12362600002362613992362606993.35832/
rDNA3380034399340993.24561/
rDNA1260016999147993.03838/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199143.882/
rDNA41600423994199911.0507/
chr214811980048119999481198998.95532/
rDNA3120032599318998.10629/
rDNA2720028799282994.61004/
chr224205300042053399420531993.45134/
chr56071180060712199607119993.45134/
chr12362600002362613992362606993.35832/
rDNA1260016999147993.03838/
chr119587600958839995880992.94011/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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