DNA Damage Atlas

SRX7780621-HeLa_CSB_7J_3h_3E10_3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11144488


Source Project ID:   

PRJNA548234

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Time:   

3hrs


Treatment Dose:   

7J/m2


Genotype:   

ΔCSB


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

TCR-seq (anti-RPB1-phospho-Ser5-CTD, clone 3E8)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr913131475713132016113131606414.7617/
chr627763328277639262776371013.4168/
chr1022517964225190372251852013.3613/
chr7_gl000195_random14133114326414176913.1325/
chr914013541614014110714013860212.8732/
chr510756447107624431076006711.7468/
chr310139433110139776310139602911.2482/
chr1716126301619766161401710.9024/
chr1159317671593193745931818210.8899/
chr1249657916496661794966042310.8002/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1159317781593189225931818215.1972
chr1022517964225190372251852013.6185
chr627763328277639262776371013.1513
chr1780287508029539802906612.1941
chr1622308187223129612230993612.0481
chr1781290888131044813047211.6971
chr510756457107624431076006711.5028
chr7_gl000195_random14135414323714176911.3558
chr1249657963496661694966042310.6258
chr2224311266243144542431399310.3936
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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