DNA Damage Atlas

SRX7783359-Hela_CPD_XR_NA_late_12_A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11147259


Source Project ID:   

PRJNA608124

Cell Type:   

HeLa-S3


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

20J/m2


Harvested Time:   

repair time: 12min


Cell Phase:   

late S phase


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr415435424715435438615435431515.0978/
chr1622012022023122017413.8161/
chr912981136912981167912981147812.4978/
chr1568309457683096556830956712.2296/
chr913353908513353925213353916712.0831/
chr318983692618983703518983697911.8481/
chr115585944615585958315585951311.7832/
chr848873930488740474887398711.7278/
chr129432539294328052943262811.5307/
chr1690858799086005908594111.5307/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr415435424715435438615435431515.0978/
chr912981136912981167912981147812.4978/
chr185755244857555228575541412.4847/
chr1568309457683096556830956712.2296/
chr1212115193412115205412115199412.1073/
chr913353908513353925213353916712.0831/
chr1111878303118785781187843212.0339/
chr115585944815585958315585951311.9578/
chr1129282560292828992928276111.9049/
chr1253254057532541535325409511.771/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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