DNA Damage Atlas

SRX7783372-Hela_CPD_DS_NA_late_12_A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11147245


Source Project ID:   

PRJNA608124

Cell Type:   

HeLa-S3


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

20J/m2


Harvested Time:   

repair time: 12min


Cell Phase:   

late S phase


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

Damage-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002262687369133319.92456-
chrY1799470017995062179949079.84492-
chr9_gl000199_random5697857476571789.34706-
chrUn_gl0002201011851079651040829.18266-
chr9_gl000199_random1680911685071682858.04246+
chrUn_gl0002251314281318051316297.90983-
chrUn_gl00022603812247.25409-
chrUn_gl000226956310640100987.09085+
chrUn_gl0002266819798273696.69158+
chr9_gl000199_random6057560944607756.50447-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022010118510796510408211.5763-
chrY17994703179950601799490710.4915-
chrUn_gl0002262687369133319.86814-
chrUn_gl000216797250313349.33052+
chr9_gl000199_random1555091558651557148.43647-
chr9_gl000199_random5697857476571788.4159-
chr9_gl000199_random1681301684851682858.36835+
rDNA3496580445737.50465+
chrUn_gl000226153752247.16666-
chrUn_gl000226956310640100987.00633+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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