DNA Damage Atlas

SRX7783373-Hela_CPD_DS_NA_late_12_B

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11147244


Source Project ID:   

PRJNA608124

Cell Type:   

HeLa-S3


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

20J/m2


Harvested Time:   

repair time: 12min


Cell Phase:   

late S phase


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

Damage-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022010110310799810408713.7658-
chrY17994703179950601799490511.0002-
chrUn_gl0002167972748133410.5078+
chr9_gl000199_random1555081558651557149.6951-
chrUn_gl0002262687385333318.5056-
rDNA3402605353897.7834-
chr9_gl000199_random5696957478572517.32297+
chr9_gl000199_random1681301684851683347.31229-
chrUn_gl0002201528491554581547817.16885-
chrUn_gl000226956310664100986.77092+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022010118510796510408711.5763-
chrY17994703179950601799490510.4915-
chrUn_gl0002262687369133319.86814-
chrUn_gl000216797250313349.33052+
chr9_gl000199_random1555091558651557148.43647-
chr9_gl000199_random5697857476572518.4159+
chr9_gl000199_random1681301684851683348.36835-
rDNA3496580453897.50465-
chrUn_gl000226153752247.16666-
chrUn_gl000226956310640100987.00633+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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