DNA Damage Atlas


SRX7783376-Hela_CPD_XR_NA_early_120_B




Basic Information

Manual

Sample ID:   

SRR11147242


Source Project ID:   

PRJNA608124

Cell Type:   

HeLa-S3


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

20J/m2


Harvested Time:   

repair time: 120min


Cell Phase:   

early S phase


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq X Ten


Technique:   

XR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr114726829647271697472693602.23665/
chr51490017414902374149018012.14805/
chr114696805246971090469705552.12756/
chr81287718871287736361287723612.10054/
chr91335884481335915351335902322.05923/
chr114759847147602766476011842.05149/
chr111019819931019840401019828362.01071/
chr114759096547596011475941651.99691/
chr203239946732401359324001661.99012/
chr116249283662497010624933561.98679/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr114726840447271697472693602.31001/
chr51490047514902366149018012.30557/
chr114696822246971090469705552.25367/
chr154086076240863297408616002.19492/
chr91308401701308417711308412512.18998/
chr114760039347602766476011842.17132/
chr145347742053478293534778902.16527/
chr117784945977851529778501612.16512/
chr157574810175749519757487442.11785/
chr67479944748067674804782.10337/
Download the Full Merged Peak List



Motif Analysis

Manual





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