DNA Damage Atlas

SRX7783376-Hela_CPD_XR_NA_early_120_B

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11147242


Source Project ID:   

PRJNA608124

Cell Type:   

HeLa-S3


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

20J/m2


Harvested Time:   

repair time: 120min


Cell Phase:   

early S phase


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq X Ten


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr114726829647271697472693602.23665/
chr51490017414902374149018012.14805/
chr114696805246971090469705552.12756/
chr81287718871287736361287723612.10054/
chr91335884481335915351335902322.05923/
chr114759847147602766476011842.05149/
chr111019819931019840401019828362.01071/
chr114759096547596011475941651.99691/
chr203239946732401359324001661.99012/
chr116249283662497010624933561.98679/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr114726840447271697472693602.31001/
chr51490047514902366149018012.30557/
chr114696822246971090469705552.25367/
chr154086076240863297408616002.19492/
chr91308401701308417711308412512.18998/
chr114760039347602766476011842.17132/
chr145347742053478293534778902.16527/
chr117784945977851529778501612.16512/
chr157574810175749519757487442.11785/
chr67479944748067674804782.10337/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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