DNA Damage Atlas

SRX7783381-Hela_CPD_DS_NA_early_120_B

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11147236


Source Project ID:   

PRJNA608124

Cell Type:   

HeLa-S3


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

20J/m2


Harvested Time:   

repair time: 120min


Cell Phase:   

early S phase


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq X Ten


Technique:   

Damage-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022629998928707915.0385-
chrUn_gl00022011294911663411474411.5101-
chrUn_gl00022015692716060616016410.7958-
rDNA67419548010.781-
chr9_gl000199_random9103393983921038.34541-
chr9_gl000199_random6053661800607227.89658+
chr9_gl000199_random1596701611181608165.68327-
chrUn_gl0002282661927716268545.35836+
chr9_gl000199_random7232673035730304.68182-
chr81282308661282341881282318104.28138+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022629998621707916.4281-
chr9_gl000199_random9103393610921039.10797-
rDNA3389733554809.10757-
chrUn_gl0002201569741606061601648.52895-
chr9_gl000199_random6053661694607228.50713+
chr9_gl000199_random7261673035730308.13284-
chr9_gl000199_random1597041611181608166.56344-
chr81282310521282341781282318104.81716+
chr9_gl000199_random1554521566991560454.78653-
chr9_gl000199_random8255883478831004.70879-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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