DNA Damage Atlas

SRX7783390-Hela_CPD_XR_NA_early_12_A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11147228


Source Project ID:   

PRJNA608124

Cell Type:   

HeLa-S3


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

20J/m2


Harvested Time:   

repair time: 12min


Cell Phase:   

early S phase


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021618924190511898614.561/
chr1147959485479601504795995214.4255/
chr145018639450188174501872714.2849/
chr781076857810770378107694613.4841/
chr1212511097612511129712511108113.322/
chr1747647321476474864764740213.3089/
chr115519444315519489815519455013.2089/
chr912397559212397590712397578613.2089/
chr552405697524058605240577712.7632/
chr758624765862622586254812.666/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr912397571812397590712397578620.1802/
chr1747647348476474844764740216.1469/
chr1075386398753865167538647714.6921/
chr1147959485479601504795995214.4255/
chr145018639450188174501872714.2849/
chr814204540914204593114204558113.949/
chr781076857810770378107694613.4841/
chr158861191588613205886125413.4393/
chr1212511097612511129712511108113.322/
chr115519444315519489815519455013.2089/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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