DNA Damage Atlas

SRX7783391-Hela_CPD_XR_NA_early_12_B

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11147227


Source Project ID:   

PRJNA608124

Cell Type:   

HeLa-S3


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

20J/m2


Harvested Time:   

repair time: 12min


Cell Phase:   

early S phase


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr91239757181239759811239757969.08591/
chr81420454091420459311420456128.92664/
chr81282305211282339491282316918.3824/
chr15886119158861320588612548.33579/
chrX2382531023825949238257368.32057/
chr31942477921942482941942479558.21125/
chr81201916061201921021201918528.19014/
chr91234642791234647401234645078.16401/
chr31896549701896562501896559128.02754/
chr177846138178461687784615618.00436/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr912397571812397590712397579612.3273/
chr552405697524058605240575411.3616/
chr1923278232328008232792310.9792/
chr115519444315519489815519455610.635/
chr1288152028815703881533210.0163/
chr78107685781077037810769459.95664/
chr91295537381295542061295539279.95664/
chr117410843774108674741085529.83061/
chr114795948547960150479599829.70211/
chr195583888755839269558390549.69599/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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