DNA Damage Atlas

SRX8461068-INDUCE-seq_HEK293_untreated_r3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914559


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

NT


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.044053


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04357168293.049-
chr19_gl000208_random659316120.1543+
rDNA6331670764759.43929+
rDNA1334114458137278.20833+
chrUn_gl00022603472007.67113-
chrUn_gl0002251315791319121317806.66136-
rDNA4194642336419466.44615+
chr9_gl000199_random5697557468573425.69932-
rDNA2805828765285425.22922-
chr7_gl000195_random2987433370326374.94915+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM04357168388.79-
chr19_gl000208_random745416120.7083+
rDNA13347144571372712.7858+
chrUn_gl000226032320011.1046-
rDNA63426702647510.145+
rDNA2820028757285426.82488-
chrUn_gl0002251315791319111317806.72723-
chr7_gl000195_random3044833370326376.28779+
chr9_gl000199_random5697557433573425.42632-
chr11492235671492240871492239364.40864+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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