Sample Detail

DNA Damage Atlas

SRX8461069-INDUCE-seq_HEK293_untreated_r4

Basic Information

Manual

Sample ID:

SRR11914558

Source Project ID:

Cell Type:

293

Organism:

Homo sapiens

Treatment:

NT

Technique:

INDUCE-seq

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.044801

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Chromosome	Start	End	Summit	Intensity	Strand
chrM	0	4357	191	472.124	-
chr19_gl000208_random	1	454	185	18.5038	-
rDNA	13334	14457	13673	13.0622	+
chrUn_gl000226	0	323	202	11.3536	-
rDNA	6342	6702	6500	9.45908	+
rDNA	7257	7604	7388	8.30369	+
chr19	41108448	41108718	41108468	6.79114	+
rDNA	28200	28767	28474	6.46775	+
chrUn_gl000225	131579	131952	131706	6.32036	+
chr9	133492083	133492386	133492083	6.05151	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrM	0	4357	191	388.79	-
chr19_gl000208_random	7	454	185	20.7083	-
rDNA	13347	14457	13673	12.7858	+
chrUn_gl000226	0	323	202	11.1046	-
rDNA	6342	6702	6500	10.145	+
rDNA	28200	28757	28474	6.82488	+
chrUn_gl000225	131579	131911	131706	6.72723	+
chr7_gl000195_random	30448	33370	32483	6.28779	-
rDNA	41952	42315	41952	5.9091	+
chr9_gl000199_random	56975	57433	57303	5.42632	-

Download the Full Merged Peak List

Visualization

Manual

Download the matrix file

Motif Analysis

Manual

Download

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