DNA Damage Atlas

SRX8461070-INDUCE-seq_HEK293_EMX1_RNP_0h_r1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914557


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

0hr


Targeted break:   

EMX1; gRNA sequence: GAGTCCGAGCAGAAGAAGAANGG


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Others:   

position: chr2:73160982-73161001; intensity: 1514.42581


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.023955


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM44103146494.124-
chr545358866453592664535906754.39-
chr273160533731611987316099745.38+
chr19_gl000208_random637711026.4833+
rDNA13366144571420419.2981-
chr1568643124686433516864312415.4583+
rDNA63426706647213.4963+
chr213917966513917998913917970312.9964+
chr9_gl000199_random56968573105716812.3124-
chr1820369231203695202036923112.142+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM44103146444.425-
chr273160798731611977316099761.331+
chr545358866453592664535906747.2338-
chr19_gl000208_random1937711027.5742+
rDNA13492143461420420.707-
rDNA28355286932849115.3543+
rDNA63466706647211.5942+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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