DNA Damage Atlas

SRX8461071-INDUCE-seq_HEK293_EMX1_RNP_0h_r2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914556


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

0hr


Targeted break:   

EMX1; gRNA sequence: GAGTCCGAGCAGAAGAAGAANGG


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Others:   

position: chr2:73160982-73161001; intensity: 1024.53814


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.020706


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM34354191371.997-
chr273160798731611977316099748.7875+
chr545358866453592664535906740.0775-
chr19_gl000208_random194435628.3567+
rDNA13492143461367316.7604+
rDNA28181287592818112.8771+
chrX76169418761697017616950112.1386+
rDNA72467602739211.2577+
chr1780245809802462218024592011.1172+
chr1775466261754665217546629211.0103+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM44103191444.425-
chr273160798731611977316099761.331+
chr545358866453592664535906747.2338-
chr19_gl000208_random193775627.5742+
rDNA13492143461367320.707+
rDNA63466706646611.5942+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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