DNA Damage Atlas

SRX8461072-INDUCE-seq_HEK293_negative_control_0h_r1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914555


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

0hr


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.014301


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM34355191363.255-
chr19_gl000208_random234528511.8198+
rDNA13344144541371610.8934+
rDNA28064287432818310.3401+
rDNA7246759973889.9447+
chr9_gl000199_random5697457319573049.04471-
chr14943307849433412494333378.17477-
chr147644852776448863764487278.12611-
chr203454272334543064345428528.00696+
chr12282700522282704002282701337.8459+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM34353191406.108-
chr19_gl000208_random233888514.6701+
rDNA13349144541371611.1628+
chr9_gl000199_random56975573195730410.8397-
rDNA7253759973889.46039+
chrX1537630001537634841537630286.40517+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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