DNA Damage Atlas

SRX8461073-INDUCE-seq_HEK293_negative_control_0h_r2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914554


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

0hr


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.0345


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04353146448.576-
rDNA28349287672847815.5645+
chr19_gl000208_random1538817015.1166+
rDNA13349144581367311.3419+
chr9_gl000199_random56975574285717610.5321-
rDNA4163542325421128.80031+
rDNA7253760273728.69945+
chr195602842456028728560284248.56045+
chr193372606833726388337260998.13243+
chrUn_gl0002251315791319071317857.93408-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM34353146406.108-
rDNA28349287432847815.6811+
chr19_gl000208_random2338817014.6701+
rDNA13349144541367311.1628+
chr9_gl000199_random56975573195717610.8397-
rDNA7253759973729.46039+
chr7_gl000195_random3152932663321535.67806+
chr213844516438445346384451643.4547+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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