DNA Damage Atlas

SRX8461074-INDUCE-seq_HEK293_EMX1_RNP_7h_r1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11914553


Source Project ID:   

PRJNA636949

Cell Type:   

293


Organism:   

Homo sapiens


Treatment:   

RNP nucleofection


Treatment Time:   

7hrs


Targeted break:   

EMX1; gRNA sequence: GAGTCCGAGCAGAAGAAGAANGG


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

INDUCE-seq


Others:   

position: chr2:73160982-73161001; intensity: 2076.46877


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.061931


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM14356146181.541-
chr273160714731615967316099746.0533+
chr545358745453593574535906734.2969-
chrUn_gl000226022720220.5479-
chr19_gl000208_random450621118.196-
rDNA13557144541379510.4-
chr154410956344109974441097629.45739+
rDNA6342670564739.10176+
rDNA2820028760285176.94105+
chr193650493736505706365049374.54914+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM34356146196.826-
chr273160714731615267316099755.5714+
chr545358745453593574535906732.8933-
chr19_gl000208_random1050621117.9761-
chrUn_gl000226022720216.2844-
rDNA13557144541379511.9496-
rDNA63426705647310.8935+
rDNA2820028757285177.77584+
chr154410956344109974441097627.4259+
rDNA7253759574457.01049-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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